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#include "Alignment/Geners/interface/IOException.hh"
#include <cassert>
#include <cstring>
#include <fstream>
#include <sstream>
#include "Alignment/Geners/interface/CompressedIO.hh"
#include "Alignment/Geners/interface/IOException.hh"
#include "Alignment/Geners/interface/Reference.hh"
#include "Alignment/Geners/interface/stringArchiveIO.hh"
static bool suffix_matches(const char *filename, const char *suffix) {
static const char default_suffix[] = ".gssaz";
assert(filename);
if (suffix == nullptr)
suffix = default_suffix;
const std::size_t lenSuffix = strlen(suffix);
const std::size_t len = strlen(filename);
bool suffixMatches = len >= lenSuffix;
for (std::size_t i = 0; i < lenSuffix && suffixMatches; ++i)
suffixMatches = suffix[i] == filename[len - lenSuffix + i];
return suffixMatches;
}
namespace gs {
bool writeStringArchive(const StringArchive &ar, const char *filename) {
assert(filename);
bool status = false;
{
std::ofstream of(filename, std::ios_base::binary);
if (of.is_open()) {
const_cast<StringArchive &>(ar).flush();
status = write_item(of, ar);
}
}
return status;
}
StringArchive *readStringArchive(const char *filename) {
assert(filename);
std::ifstream is(filename, std::ios_base::binary);
if (!is.is_open())
throw IOOpeningFailure("gs::readStringArchive", filename);
std::unique_ptr<StringArchive> ar = read_item<StringArchive>(is);
return ar.release();
}
bool writeCompressedStringArchive(const StringArchive &ar,
const char *filename,
const unsigned inCompressionMode,
const int compressionLevel,
const unsigned minSizeToCompress,
const unsigned bufSize) {
assert(filename);
if (inCompressionMode > CStringStream::BZIP2)
throw gs::IOInvalidArgument(
"In gs::writeCompressedStringArchive: "
"compression mode argument out of range");
const CStringStream::CompressionMode m = static_cast<CStringStream::CompressionMode>(inCompressionMode);
bool status = false;
{
std::ofstream of(filename, std::ios_base::binary);
if (of.is_open()) {
const_cast<StringArchive &>(ar).flush();
status = write_compressed_item(of, ar, m, compressionLevel, minSizeToCompress, bufSize);
}
}
return status;
}
StringArchive *readCompressedStringArchive(const char *filename) {
assert(filename);
std::ifstream is(filename, std::ios_base::binary);
if (!is.is_open())
throw IOOpeningFailure("gs::readCompressedStringArchive", filename);
std::unique_ptr<StringArchive> ar = read_compressed_item<StringArchive>(is);
return ar.release();
}
StringArchive *loadStringArchiveFromArchive(AbsArchive &arch, const unsigned long long id) {
Reference<StringArchive> ref(arch, id);
if (!ref.unique()) {
std::ostringstream os;
os << "In gs::loadStringArchiveFromArchive: "
<< "StringArchive item with id " << id << " not found";
throw gs::IOInvalidArgument(os.str());
}
std::unique_ptr<StringArchive> p = ref.get(0);
return p.release();
}
StringArchive *readCompressedStringArchiveExt(const char *filename, const char *suffix) {
if (suffix_matches(filename, suffix))
return readCompressedStringArchive(filename);
else
return readStringArchive(filename);
}
bool writeCompressedStringArchiveExt(const StringArchive &ar, const char *filename, const char *suffix) {
if (suffix_matches(filename, suffix))
return writeCompressedStringArchive(ar, filename);
else
return writeStringArchive(ar, filename);
}
} // namespace gs
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