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# This Jobdatabas-Class interacts with the mps.db file.
# It's member-variables are often called in the mps_... scripts.
#
# Meaning of the database variables: (still need to work on these)
#
# (1) Header
# header - version information
# batchScript - base script for serial job
# cfgTemplate - template for cfg file
# infiList - list of input files to be serialized
# classInf - batch class information (might contain two ':'-separated)
# addFiles - job name for submission
# driver - specifies whether merge job is foreseen
# nJobs - number of serial jobs (not including merge job)
# mergeScript - base script for merge job
# mssDir - directory for mass storage (e.g. Castor)
# updateTime - time of last update (seconds since 1970)
# updateTimeHuman - time of last update (human readable)
# elapsedTime - seconds since last update
# mssDirPool - pool for $mssDir (e.g. cmscaf/cmscafuser)
# pedeMem - Memory allocated for pede
# spare1
# spare2
# spare3
# (2) Job-level variables/lists
# JOBNUMBER - ADDED, selfexplanatory
# JOBDIR - name of job directory (not full path)
# JOBSTATUS - status of job
# JOBRUNTIME - present CPU time of job
# JOBNEVT - number of events processed by job
# JOBHOST - presently used to store remark
# JOBINCR - CPU increment since last check
# JOBREMARK - comment
# JOBSP1 - spare
# JOBSP2 - possible weight for pede
# JOBSP3 - possible name as given to mps_setup.pl -N <name> ...
# JOBID - ID of the LSF/HTCondor job
from builtins import range
import datetime
import time
import os
import sys
import re
import math
import fileinput
#-------------------------------------------------------------------------------
class jobdatabase:
JOBNUMBER, JOBDIR, JOBID, JOBSTATUS, JOBNTRY, JOBRUNTIME, JOBNEVT, JOBHOST, JOBINCR, \
JOBREMARK, JOBSP1, JOBSP2, JOBSP3 = ([] for i in range(13))
header, batchScript, cfgTemplate, infiList, classInf, addFiles, driver, mergeScript, \
mssDir, updateTimeHuman, mssDirPool, spare1, spare2, spare3 = ('' for i in range(14))
updateTime, elapsedTime, pedeMem , nJobs = -1, -1, -1, -1
#-------------------------------------------------------------------------------
# parses the mps.db file into the member variables and arrays
__default_db_file_name = "mps.db"
def read_db(self, db_file_name = __default_db_file_name):
try:
DBFILE = open(db_file_name,'r')
except IOError as e:
if e.args != (2, 'No such file or directory'):
raise
else:
if db_file_name == jobdatabase.__default_db_file_name:
msg = ("No 'mps.db' found. Make sure you are in a campaign "
"directory and that the campaign is set up.")
else:
msg = "Database file '"+db_file_name+"' not found. Exiting."
print(msg)
sys.exit(1)
#read infolines at the top, used rstrip to delete the '\n'
self.header = DBFILE.readline().strip()
self.batchScript = DBFILE.readline().rstrip('\n')
self.cfgTemplate = DBFILE.readline().rstrip('\n')
self.infiList = DBFILE.readline().rstrip('\n')
self.classInf = DBFILE.readline().rstrip('\n') #formerly named 'class' ->conflict
self.addFiles = DBFILE.readline().rstrip('\n')
self.driver = DBFILE.readline().rstrip('\n')
self.mergeScript = DBFILE.readline().rstrip('\n')
self.mssDir = DBFILE.readline().rstrip('\n')
self.updateTime = int(DBFILE.readline())
self.updateTimeHuman = DBFILE.readline().rstrip('\n')
self.elapsedTime = int(DBFILE.readline())
self.mssDirPool = DBFILE.readline().rstrip('\n')
self.pedeMem = int(DBFILE.readline())
self.spare1 = DBFILE.readline().rstrip('\n')
self.spare2 = DBFILE.readline().rstrip('\n')
self.spare3 = DBFILE.readline().rstrip('\n')
#read actual jobinfo into arrays
self.nJobs = 0
milleJobs = 0
for line in DBFILE:
if line.strip() == "": continue # ignore empty lines
line = line.rstrip('\n') # removes the pesky \n from line
parts = line.split(":") # read each line and split into parts list
self.JOBNUMBER.append(int(parts[0]))
self.JOBDIR.append(parts[1].strip())
self.JOBID.append(parts[2])
self.JOBSTATUS.append(parts[3].strip())
self.JOBNTRY.append(int(parts[4]))
self.JOBRUNTIME.append(int(parts[5])) #int float?
self.JOBNEVT.append(int(parts[6]))
self.JOBHOST.append(parts[7].strip())
self.JOBINCR.append(int(parts[8]))
self.JOBREMARK.append(parts[9].strip())
self.JOBSP1.append(parts[10].strip())
self.JOBSP2.append(parts[11].strip())
self.JOBSP3.append(parts[12].strip())
#count number of jobs
if not self.JOBDIR[self.nJobs].startswith("jobm"):
milleJobs += 1
self.nJobs += 1
self.nJobs = milleJobs
DBFILE.close()
#-------------------------------------------------------------------------------
# prints the member varaiables and arrays to the terminal
def print_memdb(self):
#print metainfo
print("\n=== mps database printout ===\n")
print(self.header)
print('Script:\t\t', self.batchScript)
print('cfg:\t\t', self.cfgTemplate)
print('files:\t\t', self.infiList)
print('class:\t\t', self.classInf)
print('name:\t\t', self.addFiles)
print('driver:\t\t', self.driver)
print('mergeScript:\t', self.mergeScript)
print('mssDir:\t\t', self.mssDir)
print('updateTime:\t', self.updateTimeHuman)
print('elapsed:\t', self.elapsedTime)
print('mssDirPool:\t', self.mssDirPool)
print('pedeMem:\t', self.pedeMem, '\n')
#print interesting Job-level lists ---- to add: t/evt, fix remarks
headFmt = '### dir jobid stat try rtime nevt remark weight name'
jobFmt = '%03d %6s %10s%6s %3d %5d %6d %12s %5s %s'
mrgFmt = '%s %6s %10s%6s %3d %5d %6d %12s %5s %s'
if self.nJobs>999:
headFmt = '#### dir jobid stat try rtime nevt remark weight name'
jobFmt = '%04d %7s %10s%6s %3d %5d %6d %12s %5s %s'
mrgFmt = '%s %7s %10s%6s %3d %5d %6d %12s %5s %s'
if self.nJobs>9999:
jobFmt = '%d %s %10s%6s %3d %5d %6d %12s %5s %s'
mrgFmt = '%s %8s %10s%6s %3d %5d %6d %12s %5s %s'
print(headFmt)
print("------------------------------------------------------------------------------")
for i in range(self.nJobs):
remarkField = self.JOBHOST[i]
if self.JOBSTATUS[i] == "FAIL":
remarkField = self.JOBREMARK[i]
print(jobFmt % (
self.JOBNUMBER[i],
self.JOBDIR[i],
self.JOBID[i],
self.JOBSTATUS[i][:6],
self.JOBNTRY[i],
self.JOBRUNTIME[i],
self.JOBNEVT[i],
remarkField[:12],
self.JOBSP2[i],
self.JOBSP3[i]))
#print merge Jobs if merge mode
if self.driver == 'merge':
for i in range(self.nJobs,len(self.JOBDIR)):
remarkField = self.JOBHOST[i]
if (self.JOBSTATUS[i] == "FAIL") or (self.JOBSTATUS[i] == "WARN"):
remarkField = self.JOBREMARK[i]
print(mrgFmt % (
'MMM',
self.JOBDIR[i],
self.JOBID[i],
self.JOBSTATUS[i][:6],
self.JOBNTRY[i],
self.JOBRUNTIME[i],
self.JOBNEVT[i],
remarkField[:12],
self.JOBSP2[i],
self.JOBSP3[i]))
#print summed info
totalEvents = sum(self.JOBNEVT[:self.nJobs])
totalCpu = sum(self.JOBRUNTIME[:self.nJobs])
meanCpuPerEvent = 0.
if totalEvents > 0:
meanCpuPerEvent = float(totalCpu)/totalEvents
print("------------------------------------------------------------------------------")
print("\t\t\t\t\tEvent total:\t", totalEvents)
print("\t\t\t\t\tCPU total:\t", totalCpu, 's')
print("\t\t\t\t\tMean CPU/event:\t",meanCpuPerEvent,'s')
#-------------------------------------------------------------------------------
# writes a new mps.db file from the members. Replaces the old mps.db
def write_db(self):
self.header = "mps database schema 4.0"
self.currentTime = int(time.time())
self.elapsedTime = 0;
if self.updateTime != 0:
self.elapsedTime = self.currentTime - self.updateTime
self.updateTime = self.currentTime
self.updateTimeHuman = str(datetime.datetime.today()) #no timezone :(
self.spare1 = "-- unused --"
self.spare2 = "-- unused --"
self.spare3 = "-- unused --"
#if mps.db already exists, backup as mps.db~ (in case of interupt during write)
os.system('[[ -a mps.db ]] && cp -p mps.db mps.db~')
#write mps.db header
DBFILE = open ("mps.db", "w")
headData = [ self.header, self.batchScript, self.cfgTemplate, self.infiList,
self.classInf, self.addFiles, self.driver, self.mergeScript,
self.mssDir, self.updateTime, self.updateTimeHuman,
self.elapsedTime, self.mssDirPool, self.pedeMem,
self.spare1, self.spare2, self.spare3 ]
for item in headData:
DBFILE.write("%s\n" % item)
#write mps.db jobinfo
for i in range(len(self.JOBID)):
DBFILE.write('%d:%s:%s:%s:%s:%s:%s:%s:%s:%s:%s:%s:%s\n' %
(i+1,
self.JOBDIR[i],
self.JOBID[i],
self.JOBSTATUS[i],
self.JOBNTRY[i],
self.JOBRUNTIME[i],
self.JOBNEVT[i],
self.JOBHOST[i],
self.JOBINCR[i],
self.JOBREMARK[i],
self.JOBSP1[i],
self.JOBSP2[i],
self.JOBSP3[i]))
DBFILE.close()
#-------------------------------------------------------------------------------
# returns job class as stored in db
# one and only argument may be "mille" or "pede" for mille or pede jobs
def get_class(self, argument=''):
CLASSES = self.classInf.split(':')
if len(CLASSES)<1 or len(CLASSES)>2:
print('\nget_class():\n class must be of the form \'class\' or \'classMille:classPede\', but is \'%s\'!\n\n', classInf)
sys.exit(1)
elif argument == 'mille':
return CLASSES[0]
elif argument == 'pede':
if len(CLASSES) == 1:
return CLASSES[0]
elif len(CLASSES) == 2:
return CLASSES[1]
else:
print('\nget_class():\n Know class only for \'mille\' or \'pede\', not %s!\n\n' %argument)
sys.exit(1)
#-------------------------------------------------------------------------------
# Take card file, blank all INFI directives and insert the INFI directives
# from the modifier file instead
def mps_splice(self,inCfg='',modCfg='',outCfg='the.py',isn=0,skip_events=0,max_events=0):
with open(inCfg, 'r') as INFILE:
body = INFILE.read()
# read modifier file
with open(modCfg, 'r') as MODFILE:
mods = MODFILE.read()
mods = mods.strip()
# prepare the new fileNames directive. Delete first line if necessary.
fileNames = mods.split('\n')
if 'CastorPool=' in fileNames[0]:
del fileNames[0]
# replace ISN number (input is a string of three digit number with leading zeros though)
body = re.sub(re.compile('ISN',re.M), isn, body)
# print to outCfg
with open(outCfg, 'w') as OUTFILE:
OUTFILE.write(body)
# Number of total files and number of extends for cms.vstring are needed
numberOfFiles = len(fileNames)
numberOfExtends = int(math.ceil(numberOfFiles/255.))
# Create and insert the readFile.extend lines
for j in range(numberOfExtends):
insertBlock = "readFiles.extend([\n "
i=0
currentStart = j*255
while (i<255) and ((currentStart+i)<numberOfFiles):
entry = fileNames[currentStart+i].strip()
if (i==254) or ((currentStart+i+1)==numberOfFiles):
insertBlock += "\'"+entry+"\'])\n"
else:
insertBlock += "\'"+entry+"\',\n "
i+=1
for line in fileinput.input(outCfg, inplace=1):
print(line,end='')
if re.match('readFiles\s*=\s*cms.untracked.vstring()',line):
print(insertBlock,end='')
if skip_events != 0:
with open(outCfg, "a") as f:
f.write("process.source.skipEvents = cms.untracked.uint32({0:d})\n"
.format(skip_events))
if max_events != 0:
with open(outCfg, "a") as f:
f.write("process.maxEvents = cms.untracked.PSet(input = "
"cms.untracked.int32({0:d}))\n".format(max_events))
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