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#!/usr/bin/env python3
import argparse
import sys
import logging
import copy
import h5py
import numpy as np
from collections import OrderedDict
import zlib
import lzma
from CondCore.CondHDF5ESSource.hdf5Writer import writeH5File
#Global tags hold a list of Tags
# Tags give the
# record name,
# list of data products
# list of IOVs
# list of payloads per IOV
# Payloads give
# a payload name and
# the serialized data for a data product
# the type of data for the data product
#
class IOVSyncValue(object):
def __init__(self, high, low):
self.high = high
self.low = low
class H5Payload(object):
def __init__(self,dataset,name, compressor):
self._dataset = dataset
self._hash = name
self._type = dataset.attrs['type']
self._memsize = dataset.attrs['memsize']
self._compressor = compressor
def name(self):
return self._hash
def actualType(self):
return self._type
def memsize(self):
return self._memsize
def data(self):
ds = self._dataset[()]
if len(ds) == self.memsize():
return ds
#was compressed
return self._compressor.decompress(ds)
class H5DataProduct(object):
def __init__(self, group, name, compressor):
self._type = group.attrs['type']
self._name = name
self._payloadGroup = group['Payloads']
self._compressor = compressor
def name(self):
return self._name
def objtype(self):
return self._type
def payloads(self):
return [H5Payload(self._payloadGroup[p],p.split('/')[-1], self._compressor) for p in self._payloadGroup]
def idToPayloadNames(self):
return { self._payloadGroup[p].id:p.split('/')[-1] for p in self._payloadGroup }
class H5Tag(object):
def __init__(self, file, group, name):
self._file = file
compressor = None
compressorName = self._file.attrs['default_payload_compressor']
if compressorName == 'lzma':
compressor = lzma
if compressorName == 'zlib':
compressor = zlib
self._group = group
self._record = self._group.attrs['record']
self._name = name
recordGroup = file['Records'][self._record]
dataProductsGroup = recordGroup['DataProducts']
self._dataProducts = [H5DataProduct(dataProductsGroup[g],g.split('/')[-1], compressor) for g in dataProductsGroup]
self._dbtags = self._group.attrs['db_tags']
self._time_type = self._group.attrs['time_type']
def record(self):
return self._record
def name(self):
return self._name
def time_type(self):
return self._time_type
def originalTagNames(self):
return self._dbtags
def iovsNPayloadNames(self):
#asking an h5 object for its name is a slow operation
idToName = {self._file['null_payload'].id: None}
for d in self._dataProducts:
idToName.update(d.idToPayloadNames())
first = self._group['first'][()]
last = self._group['last'][()]
payloadRefs = self._group['payload']
return list(zip( (IOVSyncValue(x['high'],x['low']) for x in first),
(IOVSyncValue(x['high'],x['low']) for x in last),
([idToName[self._file[r].id] for r in refs] for refs in payloadRefs)) )
def dataProducts(self):
return self._dataProducts
class H5GlobalTag(object):
def __init__(self, filename, name):
self._file = h5py.File(filename,'r')
self._name = name
def tags(self):
#looking up names is slow so better to make cache
tagID2Name = {}
recordsGroup = self._file['Records']
for recordName in recordsGroup:
r = recordsGroup[recordName]
tagsGroup = r['Tags']
for tagName in tagsGroup:
tagID2Name[tagsGroup[tagName].id] = tagName
globalTagGroup = self._file['GlobalTags'][self._name]
return (H5Tag(self._file, self._file[t], tagID2Name[self._file[t].id]) for t in globalTagGroup['Tags'])
def main():
parser = argparse.ArgumentParser(description='Read from HDF5 file and write to HDF5 file')
parser.add_argument('input', help="Name of file to read")
parser.add_argument('name', nargs='+', help="Name of the global tag.")
parser.add_argument('--exclude', '-e', nargs='*', help = 'list of records to exclude from the file (can not be used with --include)')
parser.add_argument('--include', '-i', nargs='*', help = 'lost of the only records that should be included in the file (can not be used with --exclude')
parser.add_argument('--output', '-o', default='test.h5cond', help='name of hdf5 output file to write')
parser.add_argument('--compressor', '-c', default='zlib', choices=['zlib', 'lzma', 'none'], help="compress data using 'zlib', 'lzma' or 'none'")
args = parser.parse_args()
if args.exclude and args.include:
print("Can not use --exclude and --include at the same time")
exit(-1)
excludeRecords = set()
if args.exclude:
excludeRecords = set(args.exclude)
includeRecords = set()
if args.include:
includeRecords = set(args.include)
writeH5File(args.output, args.name, excludeRecords, includeRecords, lambda x: H5GlobalTag(args.input, x), args.compressor)
if __name__ == '__main__':
main()
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