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#!/bin/bash
set -e
set -x
if [[ -z ${LOCAL_TEST_DIR} ]]; then
LOCAL_TEST_DIR=.
fi
cd $LOCAL_TEST_DIR
DBFILE="sequences.db"
if [[ -n $1 && -n $2 ]]; then
SECTION="--limit $1 --offset $2"
DBFILE="sequences$2.db"
THREADS="--threads 1"
fi
INFILE=""
if [[ -n $3 ]] ; then
INFILE="--infile $3"
fi
cmsswSequenceInfo.py --runTheMatrix --steps DQM,VALIDATION $INFILE $SECTION --dbfile "$DBFILE" $THREADS
sqlite3 "$DBFILE" > "legacymodules-${DBFILE}.txt" <<SQL
SELECT edmfamily, edmbase, classname, instancename, step, seqname, wfid
FROM plugin
NATURAL JOIN module
INNER JOIN sequencemodule ON module.id == moduleid
INNER JOIN sequence ON sequence.id = sequenceid
NATURAL JOIN workflow
WHERE edmfamily is null;
SQL
# There are lots of legacy producers and filters, so we check only for analyzers for now.
if grep EDAnalyzer "legacymodules-${DBFILE}.txt" ; then
echo "There are legacy modules! See list above."
exit 1
else
exit 0
fi
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