File indexing completed on 2023-03-17 10:39:10
0001 #include "Alignment/Geners/interface/IOException.hh"
0002 #include <cassert>
0003 #include <cstring>
0004 #include <fstream>
0005 #include <sstream>
0006
0007 #include "Alignment/Geners/interface/CompressedIO.hh"
0008 #include "Alignment/Geners/interface/IOException.hh"
0009 #include "Alignment/Geners/interface/Reference.hh"
0010 #include "Alignment/Geners/interface/stringArchiveIO.hh"
0011
0012 static bool suffix_matches(const char *filename, const char *suffix) {
0013 static const char default_suffix[] = ".gssaz";
0014 assert(filename);
0015 if (suffix == nullptr)
0016 suffix = default_suffix;
0017 const std::size_t lenSuffix = strlen(suffix);
0018 const std::size_t len = strlen(filename);
0019 bool suffixMatches = len >= lenSuffix;
0020 for (std::size_t i = 0; i < lenSuffix && suffixMatches; ++i)
0021 suffixMatches = suffix[i] == filename[len - lenSuffix + i];
0022 return suffixMatches;
0023 }
0024
0025 namespace gs {
0026 bool writeStringArchive(const StringArchive &ar, const char *filename) {
0027 assert(filename);
0028 bool status = false;
0029 {
0030 std::ofstream of(filename, std::ios_base::binary);
0031 if (of.is_open()) {
0032 const_cast<StringArchive &>(ar).flush();
0033 status = write_item(of, ar);
0034 }
0035 }
0036 return status;
0037 }
0038
0039 StringArchive *readStringArchive(const char *filename) {
0040 assert(filename);
0041 std::ifstream is(filename, std::ios_base::binary);
0042 if (!is.is_open())
0043 throw IOOpeningFailure("gs::readStringArchive", filename);
0044 CPP11_auto_ptr<StringArchive> ar = read_item<StringArchive>(is);
0045 return ar.release();
0046 }
0047
0048 bool writeCompressedStringArchive(const StringArchive &ar,
0049 const char *filename,
0050 const unsigned inCompressionMode,
0051 const int compressionLevel,
0052 const unsigned minSizeToCompress,
0053 const unsigned bufSize) {
0054 assert(filename);
0055 if (inCompressionMode > CStringStream::BZIP2)
0056 throw gs::IOInvalidArgument(
0057 "In gs::writeCompressedStringArchive: "
0058 "compression mode argument out of range");
0059 const CStringStream::CompressionMode m = static_cast<CStringStream::CompressionMode>(inCompressionMode);
0060 bool status = false;
0061 {
0062 std::ofstream of(filename, std::ios_base::binary);
0063 if (of.is_open()) {
0064 const_cast<StringArchive &>(ar).flush();
0065 status = write_compressed_item(of, ar, m, compressionLevel, minSizeToCompress, bufSize);
0066 }
0067 }
0068 return status;
0069 }
0070
0071 StringArchive *readCompressedStringArchive(const char *filename) {
0072 assert(filename);
0073 std::ifstream is(filename, std::ios_base::binary);
0074 if (!is.is_open())
0075 throw IOOpeningFailure("gs::readCompressedStringArchive", filename);
0076 CPP11_auto_ptr<StringArchive> ar = read_compressed_item<StringArchive>(is);
0077 return ar.release();
0078 }
0079
0080 StringArchive *loadStringArchiveFromArchive(AbsArchive &arch, const unsigned long long id) {
0081 Reference<StringArchive> ref(arch, id);
0082 if (!ref.unique()) {
0083 std::ostringstream os;
0084 os << "In gs::loadStringArchiveFromArchive: "
0085 << "StringArchive item with id " << id << " not found";
0086 throw gs::IOInvalidArgument(os.str());
0087 }
0088 CPP11_auto_ptr<StringArchive> p = ref.get(0);
0089 return p.release();
0090 }
0091
0092 StringArchive *readCompressedStringArchiveExt(const char *filename, const char *suffix) {
0093 if (suffix_matches(filename, suffix))
0094 return readCompressedStringArchive(filename);
0095 else
0096 return readStringArchive(filename);
0097 }
0098
0099 bool writeCompressedStringArchiveExt(const StringArchive &ar, const char *filename, const char *suffix) {
0100 if (suffix_matches(filename, suffix))
0101 return writeCompressedStringArchive(ar, filename);
0102 else
0103 return writeStringArchive(ar, filename);
0104 }
0105 }
