HIPAlignmentAlgorithm/test/breakupHippyList.sh

0001 #!/bin/bash
0002
0003 infile=$1
0004 iovfile=$2
0005 nbreaks=-1
0006 if [[ $3 != "" ]];then
0007         let nbreaks=$3
0008 fi
0009
0010 iovlist=()
0011 while IFS='' read -r line || [[ -n "$line" ]]; do
0012     iovlist+=($line)
0013 done < $iovfile
0014
0015 let niovs=${#iovlist[@]}
0016 let lastiov=$niovs-1
0017 for (( i=0; i<${niovs}; i++ ));
0018 do
0019 let ni=$i+1
0020
0021 core=${infile%%.dat*}
0022 newfile=$core".dat_"${iovlist[i]}
0023 rm -f $newfile
0024
0025 str=""
0026 let nadded=1
0027
0028 for f in $(cat $infile)
0029 do
0030
0031 if [[ $f != "#"* ]];then
0032         nobegin=${f#*/000/}
0033         noend=${nobegin%%/00000*}
0034         let run=${noend/\//}
0035         addfile=${f%*,}
0036         if [ $i -eq $lastiov ];then
0037                 if [ $run -ge ${iovlist[i]} ]; then
0038
0039         appendstr=""
0040         if [ $nadded -eq $nbreaks ];then
0041                 appendstr="\n"
0042                 let nadded=0
0043         else
0044                 appendstr=","
0045         fi
0046         addfile=$addfile$appendstr
0047
0048                         str=$str$addfile
0049                         let nadded=nadded+1
0050                 fi
0051         elif [ $run -ge ${iovlist[i]} ] && [ $run -lt ${iovlist[$ni]} ]; then
0052
0053         appendstr=""
0054         if [ $nadded -eq $nbreaks ];then
0055                 appendstr="\n"
0056                 let nadded=0
0057         else
0058                 appendstr=","
0059         fi
0060         addfile=$addfile$appendstr
0061
0062                 str=$str$addfile
0063                 let nadded=nadded+1
0064         fi
0065 fi
0066
0067 done
0068
0069 str2=${str%,}
0070 if [[ $str2 != "" ]];then
0071         echo -e $str2 >> $newfile
0072 else
0073         $newfile" is empty. Please skip!"
0074 fi
0075
0076 done