BeamSpotProducer/scripts/createPayload.py

0001 #!/usr/bin/env python3
0002 #____________________________________________________________
0003 #
0004 #  createPayload
0005 #
0006 # A very simple way to create condition DB payloads
0007 #
0008 # Francisco Yumiceva
0009 # yumiceva@fnal.gov
0010 #
0011 # Fermilab, 2009
0012 #
0013 #____________________________________________________________
0014
0015 """
0016    createPayload.py
0017
0018    A very simple script to handle payload for beam spot results
0019
0020    usage: %prog -d <data file/directory> -t <tag name>
0021    -c, --copy   : Only copy files from input directory to test/workflow/files/
0022    -d, --data   = DATA: Data file, or directory with data files.
0023    -I, --IOVbase = IOVBASE: options: runbase(default), lumibase, timebase
0024    -o, --overwrite : Overwrite results files when copying.
0025    -O, --Output = OUTPUT: Output directory for data files (workflow directory)
0026    -m, --merged : Use when data file contains combined results.
0027    -n, --newarchive : Create a new archive directory when copying.
0028    -t, --tag    = TAG: Database tag name.
0029    -T, --Test   : Upload files to Test dropbox for data validation.
0030    -u, --upload : Upload files to offline drop box via scp.
0031    -z, --zlarge : Enlarge sigmaZ to 10 +/- 0.005 cm.
0032
0033    Francisco Yumiceva (yumiceva@fnal.gov)
0034    Fermilab 2010
0035
0036 """
0037 from __future__ import print_function
0038
0039
0040 from builtins import range
0041 import sys,os
0042 import subprocess, re, time
0043 import datetime
0044 from CommonMethods import *
0045
0046 workflowdir             = 'test/workflow/'
0047 workflowdirLastPayloads = workflowdir + 'lastPayloads/'
0048 workflowdirTmp          = workflowdir + 'tmp/'
0049 workflowdirArchive      = workflowdir + 'archive/'
0050 optionstring            = ''
0051 tagType                 = ''
0052
0053 def copyToWorkflowdir(path):
0054     global workflowdirArchive
0055     lsCommand      = ''
0056     cpCommand      = ''
0057     listoffiles    = []
0058     tmplistoffiles = []
0059     if path.find('castor') != -1:
0060         print("Getting files from castor ...")
0061         lsCommand = 'ns'
0062         cpCommand = 'rf'
0063     elif not os.path.exists(path):
0064         exit("ERROR: File or directory " + path + " doesn't exist")
0065
0066     if path[len(path)-4:len(path)] != '.txt':
0067         if path[len(path)-1] != '/':
0068             path = path + '/'
0069
0070         aCommand  = lsCommand  + 'ls '+ path + " | grep .txt"
0071
0072         tmpstatus = subprocess.getstatusoutput( aCommand )
0073         tmplistoffiles = tmpstatus[1].split('\n')
0074         if len(tmplistoffiles) == 1:
0075             if tmplistoffiles[0] == '':
0076                 exit('ERROR: No files found in directory ' + path)
0077             if tmplistoffiles[0].find('No such file or directory') != -1:
0078                 exit("ERROR: File or directory " + path + " doesn't exist")
0079
0080     else:
0081         tmplistoffiles.append(path[path.rfind('/')+1:len(path)])
0082         path = path[0:path.rfind('/')+1]
0083
0084
0085     archiveName = path
0086     if path == './':
0087         archiveName = os.getcwd() + '/'
0088         archiveName = archiveName[archiveName[:len(archiveName)-1].rfind('/')+1:len(archiveName)]
0089     if path[:len(path)-1].rfind('/') != -1:
0090         archiveName = path[path[:len(path)-1].rfind('/')+1:len(path)]
0091
0092     workflowdirArchive = workflowdirArchive + archiveName
0093     if tagType != '' :
0094         workflowdirArchive = workflowdirArchive[:len(workflowdirArchive)-1] + '_' + tagType + '/'
0095     if not os.path.isdir(workflowdirArchive):
0096         os.mkdir(workflowdirArchive)
0097     elif(option.newarchive):
0098 #        tmpTime = str(datetime.datetime.now())
0099 #        tmpTime = tmpTime.replace(' ','-')
0100 #        tmpTime = tmpTime.replace('.','-')
0101 #        workflowdirArchive = workflowdirArchive[:len(workflowdirArchive)-1] + '_' + tmpTime + '/'
0102 #        os.mkdir(workflowdirArchive)
0103         for n in range(1,100000):
0104             tryDir = workflowdirArchive[:len(workflowdirArchive)-1] + '_' + str(n) + '/'
0105             if not os.path.isdir(tryDir):
0106                 workflowdirArchive = tryDir
0107                 os.mkdir(workflowdirArchive)
0108                 break
0109             elif n == 100000-1:
0110                 exit('ERROR: Unbelievable! do you ever clean ' + workflowdir + '?. I think you have to remove some directories!')
0111
0112     for ifile in tmplistoffiles:
0113         if ifile.find('.txt') != -1:
0114             if os.path.isfile(workflowdirArchive+"/"+ifile):
0115                 if option.overwrite:
0116                     print("File " + ifile + " already exists in destination. We will overwrite it.")
0117                 else:
0118                     print("File " + ifile + " already exists in destination. Keep original file.")
0119                     listoffiles.append( workflowdirArchive + ifile )
0120                     continue
0121             listoffiles.append( workflowdirArchive + ifile )
0122             # copy to local disk
0123             aCommand = cpCommand + 'cp '+ path + ifile + " " + workflowdirArchive
0124             print(" >> " + aCommand)
0125             tmpstatus = subprocess.getstatusoutput( aCommand )
0126     return listoffiles
0127
0128 def mkWorkflowdir():
0129     global workflowdir
0130     global workflowdirLastPayloads
0131     global workflowdirTmp
0132     global workflowdirArchive
0133     if not os.path.isdir(workflowdir):
0134         print("Making " + workflowdir + " directory...")
0135         os.mkdir(workflowdir)
0136
0137     if not os.path.isdir(workflowdirLastPayloads):
0138         os.mkdir(workflowdirLastPayloads)
0139     else:
0140         os.system("rm -f "+ workflowdirLastPayloads + "*")
0141
0142     if not os.path.isdir(workflowdirTmp):
0143         os.mkdir(workflowdirTmp)
0144     else:
0145         os.system("rm -f "+ workflowdirTmp + "*")
0146
0147     if not os.path.isdir(workflowdirArchive):
0148         os.mkdir(workflowdirArchive)
0149
0150 ###############################################################################################3
0151 if __name__ == '__main__':
0152     #if len(sys.argv) < 2:
0153 #   print "\n [usage] createPayload <beamspot file> <tag name> <IOV since> <IOV till=-1=inf> <IOV comment> <destDB=oracle://cms_orcon_prod/CMS_COND_31X_BEAMSPOT>"
0154         #print " e.g. createPayload BeamFitResults_template.txt BeamSpotObjects_2009_v1_express 122745 \"\" \"beam spot for early collisions\" \"oracle://cms_orcon_prod/CMS_COND_31X_BEAMSPOT\"\n"
0155         #sys.exit()
0156
0157
0158      # COMMAND LINE OPTIONS
0159     #################################
0160     option,args = parse(__doc__)
0161     if not args and not option: exit()
0162
0163     workflowdir             = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/test/workflow/"
0164     if option.Output:
0165         workflowdir = option.Output
0166         if workflowdir[len(workflowdir)-1] != '/':
0167             workflowdir = workflowdir + '/'
0168     workflowdirLastPayloads = workflowdir + "lastPayloads/"
0169     workflowdirTmp          = workflowdir + "tmp/"
0170     workflowdirArchive      = workflowdir + "archive/"
0171
0172     if ( (option.data and option.tag) or (option.data and option.copy)):
0173         mkWorkflowdir()
0174
0175     if not option.data:
0176         print("ERROR: You must provide the data file or the a directory with data files")
0177         exit()
0178
0179     if option.copy:
0180         copyToWorkflowdir(option.data)
0181         exit("Files copied in " + workflowdirArchive)
0182
0183     tagname = ''
0184     if option.tag:
0185         tagname = option.tag
0186         if tagname.find("offline") != -1:
0187             tagType = "offline"
0188         elif tagname.find("prompt") != -1:
0189             tagType = "prompt"
0190         elif tagname.find("express") != -1 :
0191             tagType = "express"
0192         elif tagname.find("hlt") != -1:
0193             tagType = "hlt"
0194         else:
0195             print("I am assuming your tag is for the offline database...")
0196             tagType = "offline"
0197
0198     else:
0199         print("ERROR: You must provide the database tag name")
0200         exit()
0201
0202     IOVbase = 'runbase'
0203     timetype = 'runnumber'
0204     if option.IOVbase:
0205         if option.IOVbase != "runbase" and option.IOVbase != "lumibase" and option.IOVbase != "timebase":
0206             print("\n\n unknown iov base option: "+ option.IOVbase +" \n\n\n")
0207             exit()
0208         IOVbase = option.IOVbase
0209
0210     listoffiles = copyToWorkflowdir(option.data)
0211     # sort list of data files in chronological order
0212     sortedlist = {}
0213
0214     for beam_file in listoffiles:
0215
0216         if len(listoffiles)==1 and option.merged:
0217             mergedfile = open(beam_file)
0218             alllines = mergedfile.readlines()
0219             npayloads = len(alllines)/23
0220             for i in range(0,npayloads):
0221                 block = alllines[i * 23: (i+1)*23]
0222                 #line = block[2]
0223                 #atime = time.strptime(line.split()[1] +  " " + line.split()[2] + " " + line.split()[3],"%Y.%m.%d %H:%M:%S %Z")
0224                 line = block[0]
0225                 atime = line.split()[1]
0226                 sortedlist[atime] = block
0227             break
0228
0229         tmpfile = open(beam_file)
0230         atime = ''
0231         arun = ''
0232         alumis = ''
0233         skip = False
0234         for line in tmpfile:
0235             if line.find('Runnumber') != -1:
0236                 arun = line.split()[1]
0237             if line.find("EndTimeOfFit") != -1:
0238                 atime = time.strptime(line.split()[1] +  " " + line.split()[2] + " " + line.split()[3],"%Y.%m.%d %H:%M:%S %Z")
0239             if line.find("LumiRange") != -1:
0240                 alumi = line.split()[3]
0241             if line.find('Type') != -1 and line.split()[1] == '0':
0242                 skip = True
0243         if skip:
0244             print(" zero fit result, skip file " + beam_file + " with time stamp:")
0245             print(" run " + arun + " lumis " + alumis)
0246         else:
0247             sortedlist[int(pack(int(arun), int(alumi)))] = beam_file
0248
0249         tmpfile.close()
0250
0251     keys = sorted(sortedlist.keys())
0252
0253     # write combined data file
0254     if not os.path.isdir(workflowdirArchive + "AllIOVs"):
0255         os.mkdir(workflowdirArchive + "AllIOVs")
0256     allbeam_file = workflowdirArchive + "AllIOVs/" + tagname + "_all_IOVs.txt"
0257 #    if os.path.isfile(allbeam_file):
0258
0259     allfile = open( allbeam_file, 'a')
0260     print(" merging all results into file: " + allbeam_file)
0261
0262     # check if merged sqlite file exists
0263     if os.path.exists(workflowdirArchive+"payloads/Combined.db"):
0264         os.system("rm "+workflowdirArchive+"payloads/Combined.db")
0265
0266
0267     nfile = 0
0268     iov_since_first = '1'
0269     total_files = len(keys)
0270
0271     destDB = 'oracle://cms_orcon_prod/CMS_COND_31X_BEAMSPOT'
0272     if option.Test:
0273         destDB = 'oracle://cms_orcoff_prep/CMS_COND_BEAMSPOT'
0274
0275     iov_comment = 'Beam spot position'
0276     for key in keys:
0277
0278         iov_since = '1'
0279         iov_till = ''
0280
0281         suffix = "_" + str(nfile)
0282         writedb_template = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/test/write2DB_template.py"
0283         readdb_template  = os.getenv("CMSSW_BASE") + "/src/RecoVertex/BeamSpotProducer/test/readDB_template.py"
0284         sqlite_file_name = tagname + suffix
0285         sqlite_file   = workflowdirTmp + sqlite_file_name + '.db'
0286         metadata_file = workflowdirTmp + sqlite_file_name + '.txt'
0287         nfile = nfile + 1
0288
0289     #### WRITE sqlite file
0290
0291         beam_file = sortedlist[key]
0292         tmp_datafilename = workflowdirTmp+"tmp_datafile.txt"
0293         if option.merged:
0294             tmpfile = file(tmp_datafilename,'w')
0295             tmpfile.writelines(sortedlist[key])
0296             tmpfile.close()
0297             beam_file = tmp_datafilename
0298
0299         print("read input beamspot file: " + beam_file)
0300         tmpfile = open(beam_file)
0301         beam_file_tmp = workflowdirTmp + beam_file[beam_file.rfind('/')+1:] + ".tmp"
0302         newtmpfile = open(beam_file_tmp,"w")
0303         tmp_run = ""
0304         tmp_lumi_since = ""
0305         tmp_lumi_till = ""
0306         for line in tmpfile:
0307             if line.find("Runnumber") != -1:
0308                 iov_since = line.split()[1]
0309                 iov_till = iov_since
0310                 tmp_run = line.split()[1]
0311             elif line.find("LumiRange") != -1:
0312                 tmp_lumi_since = line.split()[1]
0313                 tmp_lumi_till = line.split()[3]
0314             elif line.find("BeginTimeOfFit") == -1 and line.find("EndTimeOfFit") == -1 and line.find("LumiRange") == -1:
0315                 if line.find("sigmaZ0") != -1 and option.zlarge:
0316                     line = "sigmaZ0 10\n"
0317                 if line.find("Cov(3,j)") != -1 and option.zlarge:
0318                     line = "Cov(3,j) 0 0 0 2.5e-05 0 0 0\n"
0319                 newtmpfile.write(line)
0320             allfile.write(line)
0321
0322         # pack run number and lumi section
0323         if IOVbase == "lumibase":
0324             timetype = "lumiid"
0325             iov_since = str( pack(int(tmp_run), int(tmp_lumi_since)) )
0326             iov_till = str( pack(int(tmp_run), int(tmp_lumi_till)) )
0327         # keep first iov for merged output metafile
0328         if nfile == 1:
0329             iov_since_first = iov_since
0330
0331         tmpfile.close()
0332         newtmpfile.close()
0333         if option.copy:
0334             continue
0335
0336         beam_file = beam_file_tmp
0337
0338         if not writeSqliteFile(sqlite_file,tagname,timetype,beam_file,writedb_template,workflowdirTmp):
0339             print("An error occurred while writing the sqlite file: " + sqlite_file)
0340
0341         subprocess.getstatusoutput('rm -f ' + beam_file)
0342         ##### READ and check sqlite file
0343         readSqliteFile(sqlite_file,tagname,readdb_template,workflowdirTmp)
0344
0345         #### Merge sqlite files
0346         if not os.path.isdir(workflowdirArchive + 'payloads'):
0347             os.mkdir(workflowdirArchive + 'payloads')
0348
0349         print(" merge sqlite file ...")
0350         appendSqliteFile("Combined.db", sqlite_file, tagname, iov_since, iov_till ,workflowdirTmp)
0351
0352         # keep last payload for express, and prompt tags
0353         if nfile == total_files:
0354             print(" this is the last IOV. You can use this payload for express and prompt conditions.")
0355             os.system("cp "+sqlite_file+ " "+workflowdirArchive+"payloads/express.db")
0356             print("a copy of this payload has been placed at:")
0357             print(workflowdirArchive+"payloads/express.db")
0358
0359         # clean up
0360         os.system("rm "+ sqlite_file)
0361         print(" clean up done.")
0362
0363     os.system("mv " + workflowdirTmp + "Combined.db " + workflowdirArchive + "payloads/")
0364     allfile.close()
0365
0366     #### CREATE payload for merged output
0367
0368     print(" create MERGED payload card for dropbox ...")
0369
0370     sqlite_file   = workflowdirArchive+'payloads/Combined.db'
0371     metadata_file = workflowdirArchive+'payloads/Combined.txt'
0372     dfile = open(metadata_file,'w')
0373
0374     dfile.write('destDB '+ destDB +'\n')
0375     dfile.write('tag '+ tagname +'\n')
0376     dfile.write('inputtag' +'\n')
0377     dfile.write('since ' + iov_since_first +'\n')
0378     #        dfile.write('till ' + iov_till +'\n')
0379     if IOVbase == "runbase":
0380         dfile.write('Timetype runnumber\n')
0381     elif IOVbase == "lumibase":
0382         dfile.write('Timetype lumiid\n')
0383     checkType = tagType
0384     if tagType == "express":
0385         checkType = "hlt"
0386     dfile.write('IOVCheck ' + checkType + '\n')
0387     dfile.write('usertext ' + iov_comment +'\n')
0388
0389     dfile.close()
0390
0391     uuid = subprocess.getstatusoutput('uuidgen -t')[1]
0392     final_sqlite_file_name = tagname + '@' + uuid
0393
0394     if not os.path.isdir(workflowdirArchive + 'payloads'):
0395         os.mkdir(workflowdirArchive + 'payloads')
0396     subprocess.getstatusoutput('cp ' + sqlite_file   + ' ' + workflowdirArchive + 'payloads/' + final_sqlite_file_name + '.db')
0397     subprocess.getstatusoutput('cp ' + metadata_file + ' ' + workflowdirArchive + 'payloads/' + final_sqlite_file_name + '.txt')
0398
0399     subprocess.getstatusoutput('mv ' + sqlite_file   + ' ' + workflowdirLastPayloads + final_sqlite_file_name + '.db')
0400     subprocess.getstatusoutput('mv ' + metadata_file + ' ' + workflowdirLastPayloads + final_sqlite_file_name + '.txt')
0401
0402     print(workflowdirLastPayloads + final_sqlite_file_name + '.db')
0403     print(workflowdirLastPayloads + final_sqlite_file_name + '.txt')
0404
0405     if option.upload:
0406         print(" scp files to offline Drop Box")
0407         dropbox = "/DropBox"
0408         if option.Test:
0409             dropbox = "/DropBox_test"
0410
0411         uploadSqliteFile(workflowdirLastPayloads,final_sqlite_file_name,dropbox)